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Amount; HCD: Higher-energy collisioninduced dissociation; iBAQ: Intensity-based absolute quantification;Mann and
Dalloul RA, Very long JA, Zimin AV, Aslam L, Beal K, Blomberg L, Bouffard P, Burt DW, Crasta O, GSK-923295 site Crooijmans RPMA, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, Dong JJ, Evans C, Frederickson KM, Flicek P, Florea L, Folkerts O, Groenen MAM, Harkins TT, Herrero J, Hoffmann S, Megens HJ, Jiang A, de Jong P, Kaiser P, Kim H, Kim KW, Kim S, Langenberger D, Lee MK, Lee T, Mane S, Marcais G, Marz M, McElroy AP, Modise T, Nefedov M, Notredame C, Paton IR, Payne WS, Pertea G, Prickett D, Puiu D, Qioa D, Raineri E, Ruffier M, Salzberg SL, Schatz MC, Scheuring C, Schmidt CJ, Schroeder S, Searle SMJ, Smith EJ, Smith J, Sonstegard TS, Stadler PF, Tafer H, Tu ZJ, Van Tassell CP, Vilella AJ, Williams KP, Yorke JA, Zhang LQ, Zhang HB, Zhang XJ, Zhang Y, Reed KM: Multi-platform next-generation sequencing of your domestic turkey (Meleagris PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/3504060 gallopavo): genome assembly and analysis. Rappsilber J, Mann M, Ishihama Y: Protocol for Vemurafenib web micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics making use of StageTips. Dalloul RA, Very long JA, Zimin AV, Aslam L, Beal K, Blomberg L, Bouffard P, Burt DW, Crasta O, Crooijmans RPMA, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, Dong JJ, Evans C, Frederickson KM, Flicek P, Florea L, Folkerts O, Groenen MAM, Harkins TT, Herrero J, Hoffmann S, Megens HJ, Jiang A, de Jong P, Kaiser P, Kim H, Kim KW, Kim S, Langenberger D, Lee MK, Lee T, Mane S, Marcais G, Marz M, McElroy AP, Modise T, Nefedov M, Notredame C, Paton IR, Payne WS, Pertea G, Prickett D, Puiu D, Qioa D, Raineri E, Ruffier M, Salzberg SL, Schatz MC, Scheuring C, Schmidt CJ, Schroeder S, Searle SMJ, Smith EJ, Smith J, Sonstegard TS, Stadler PF, Tafer H, Tu ZJ, Van Tassell CP, Vilella AJ, Williams KP, Yorke JA, Zhang LQ, Zhang HB, Zhang XJ, Zhang Y, Reed KM: Multi-platform next-generation sequencing on the domestic turkey (Meleagris PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/3504060 gallopavo): genome assembly and investigation. PLOS Biology 2010, 8:e1000475. 23. Dodgeson JB, Delany ME, Cheng HH: Poultry genome sequences: development and fantastic worries. Cytogenet Genome Res 2011, 134:19?six. 24. Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M: In-gel digestion for mass spectrometric characterization of proteins and proteomes. NatureProtocols 2006, 1:2856?860. twenty five. Rappsilber J, Mann M, Ishihama Y: Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics utilizing StageTips. Nat Protoc 2007, two:1896?906. 26. Michalski A, Damoc E, Lange O, Denisov E, Nolting D, M ler M, Viner R, Schwartz J, Remes P, Belford M, Dunyach J-J, Cox J, Horning S, Mann M, Makarov A: Ultra higher resolution linear ion entice orbitrap mass spectrometer (Orbitrap Elite) facilitates major down LC MS/MS and flexible peptide fragmentation modes. Mol Mobile Proteomics 2012, eleven:1?1. 27. Michalski A, Neuhauser N, Cox J, Mann M: A scientific investigation into the mother nature of tryptic HCD spectra. J Proteome Res 2012, eleven:5479?491. 28. Cox J, Mann M: MaxQuant enables large peptide identification charges, individualized ppb-range mass accuracies and proteome-wide protein quantification. Mother nature Biotechnol 2009, 26:1367?372. 29. Cox J, Matic I, Hilger M, Nagaraj N, Selbach M, Olsen JV, Mann M: A functional guideline to your MaxQuant computational system for SILACbased quantitative proteomics. Nat Protoc 2009, 4:698?05.
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